PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1471
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 220aa    MW: 24368.7 Da    PI: 7.5988
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1471genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY241.51.8e-74111772170
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvs 97 
                  d++s s+q+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn+       + ++h+++s+  +  llee ++  ++++ +v+++ ++++s  
  Gh_D07G1471  11 DHVSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMLGLLLPSTNQHHVGHSFFTPhnLLEEIRS--SATTNMVINQPNPNNSLM 106
                  7999********************************************999999999999**9998766234555443..344444444444443333 PP

        YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       +   e++p++p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP ihfgl
  Gh_D07G1471 107 P-P-IHGGVEDIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPLIHFGL 177
                  2.3.357889****999******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-7015177IPR006780YABBY protein
SuperFamilySSF470956.81E-8120170IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-4126169IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSSSSAAFSP DHVSPSDQLC YVHCNFCDTV LAVSVPCTSL FKTVTVRCGH CTNLLSVNML  60
GLLLPSTNQH HVGHSFFTPH NLLEEIRSSA TTNMVINQPN PNNSLMPPIH GGVEDIPKPP  120
VVNRPPEKRQ RVPSAYNRFI KDEIQRIKAG NPDISHREAF SAAAKNWAHF PLIHFGLMPD  180
QPVKKTNVHQ QEGEEMVMKD GFFAPNNVGV TPYQTSPNYC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.190320.0boll| leaf| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483031.11e-162PREDICTED: axial regulator YABBY 1-like
SwissprotO221524e-93YAB1_ARATH; Axial regulator YABBY 1
TrEMBLA0A0D2Q0711e-162A0A0D2Q071_G
STRINGVIT_15s0048g00550.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22172877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-87YABBY family protein